Project Status

For full details see the GitHub projects, especially:

• Colab as main deploy target
• Reconstruction methods

For more context see the project's main notebook on Colab, brightfield neuron reconstruction challenge.ipynb.

Status as of Mon, 2019-12-01:

• [x] intro doc: sufficiently readable
• [x] Dataset exploration:
  • On file level, dataset_manifest.ipynb
  • On image level, initial_dataset_visualization.ipynb
• [ ] Method #1: ShuTu reconstruction
  • [x] Show working on Colab
  • [x] Make SWC from ShuTu's demo data
  • [ ] Make SWC form Allen dataset
• [ ] Method #2: U-Net reconstruction: only researched
  • [ ] CPU deploy
  • [ ] GPU deploy
• [ ] Summary juxtaposer: not forked out yet but code is ~75% completed
• [ ] Judge's Google Form and Google Sheet: not started